Publications

The following are publications made possible by iCER resources. MSU faculty that would like to highlight the output of their research that's benefited from iCER resources are invited to contact us.

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H. L. Crawford, Fallon, P., Macchiavelli, A. O., Clark, R. M., Brown, B. A., Tostevin, J. A., Bazin, D., Aoi, N., Doornenbal, P., Matsushita, M., Scheit, H., Steppenbeck, D., Takeuchi, S., Baba, H., Campbell, C. M., Cromaz, M., Ideguchi, E., Kobayashi, N., Kondo, Y., Lee, G., Lee, I. Y., Lee, J., Li, K., Michimasa, S., Motobayashi, T., Nakamura, T., Ota, S., Paschalis, S., Petri, M., Sako, T., Sakurai, H., Shimoura, S., Takechi, M., Togano, Y., Wang, H., and Yoneda, K., “Shell and Shape Evolution at N=28: The 40Mg Ground State”, PHYSICAL REVIEW C, vol. 80, 2014.
C. J. Cramer, Kinal, A., Wloch, M., Piecuch, P., and Gagliardi, L., “Theoretical Characterization of End-on and Side-on Peroxide Coordination in Ligated Cu2O2 Models”, The Journal of Physical Chemistry A, vol. 110, no. 40, pp. 11557-11568, 2006.
C. J. Cramer, Gour, J. R., Kinal, A., Wloch, M., Piecuch, P., Shahi, A. R. M., and Gagliardi, L., “Stereoelectronic Effects on Molecular Geometries and State-Energy Splittings of Ligated Monocopper Diozygen Complexes”, The Journal of Physical Chemistry, vol. 112, no. 16, pp. 3754-3767, 2008.
C. J. Cramer, Wloch, M., Piecuch, P., Puzzarini, C., and Gagliardi, L., “Theoretical Models on the Cu2O2 Torture Track. Mechanistic Implications for Oxytyrosinase and Small-molecule Analogs”, The Journal of Physical Chemistry A, vol. 110, pp. 1991–2004, 2006.
D. Colbry, Punch, W., and Bauer, W., “The Institute for Cyber-Enabled Research: Regional Organization to Promote Computation in Science”, in In proceedings of 2013 XSEDE Conference, San Diego, California, 2013.
D. Colbry, Dyer, F., Dworkin, I., Wang, Y., and Wang, L., “Speeding up Scientific Imaging Workflows: Design of Automated Image Annotation Tool”, in Workshop on Computer Centered Human Vision, Tampa, Florida, 2013.
D. Colbry and Luchini-Colbry, K., “STEM inSight: Developing a Research Skills Course for First- and Second-Year Students”, in Proceedings of the 2013 Conference of the American Society for Engineering Education, Atlanta, GA, 2013.
D. Colbry and Luchini-Colbry, K., “CyberGreen: Hands-On Engineering Research in Sustainability and Supercomputing””, in ASEE North Central Section 2012 Conference, Ada, Ohio, 2012.
D. Colbry, “Reducing the barrier to entry using portable apps”, in Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, New York, NY, USA, 2011, p. 47.
D. Coe, Zitrin, A., Carrasco, M., Shu, X., Zheng, W., Postman, M., Bradley, L., Koekemoer, A., Bouwens, R., Broadhurst, T., Monna, A., Host, O., Moustakas, L. A., Ford, H., Moustakas, J., van der Wel, A., Donahue, M., Rodney, S. A., Ben{\'ıtez, N., Jouvel, S., Seitz, S., Kelson, D. D., and Rosati, P., “CLASH: Three Strongly Lensed Images of a Candidate z 11 Galaxy”, The Astrophysical Journal, vol. 762, 2013.
D. Coe, Zitrin, A., Carrasco, M., Shu, X., Zheng, W., Postman, M., Bradley, L., Koekemoer, A., Bouwens, R., Broadhurst, T., Monna, A., Host, O., Moustakas, L. A., Ford, H., Moustakas, J., van der Wel, A., Donahue, M., Rodney, S. A., Benítez, N., Jouvel, S., Seitz, S., Kelson, D. D., and Rosati, P., “CLASH: Three Strongly Lensed Images of a Candidate z~11 Galaxy”, The Astrophysical Journal, vol. 762, no. 1, 2013.
D. Coe, Umetsu, K., Zitrin, A., Donahue, M., Medezinski, E., Postman, M., Carrasco, M., Anguita, T., Geller, M. J., Rines, K. J., Diaferio, A., Kurtz, M. J., Bradley, L., Koekemoer, A., Zheng, W., Nonino, M., Molino, A., Mahdavi, A., Lemze, D., Infante, L., Ogaz, S., Melchior, P., Host, O., Ford, H., Grillo, C., Rosati, P., Jiménez-Teja, Y., Moustakas, J., Ascaso, B., Lahav, O. ;, Bartelmann, M., Benítez, N., Bouwens, R., Graur, O., Graves, G., Jha, S., Jouvel, S., Kelson, D., Moustakas, L., Maoz, D., Meneghetti, M., Merten, J., Riess, A., Rodney, S., and Seitz, S., “CLASH: Precise New Constraints on the Mass Profile Galaxy Cluster A2261”, The Astrophysical Journal, vol. 757, no. 1, 2012.
J. Clune, Beckmann, B. E., Ofria, C., and Pennock, R. T., “Evolving coordinated quadruped gaits with the HyperNEAT generative encoding”, in Proceedings of the IEEE Congress on Evolutionary Computation, 2009, pp. 2764-2771.
J. Clune, Stanley, K. O., Pennock, R. T., and Ofria, C., “On the Performance of Indirect Encoding Across the Continuum of Regularity”, IEEE Transactions on Evolutionary Computation, 2011.
J. Clune, Ofria, C., and Pennock, R. T., “How a generative encoding fares as problem-regularity decreases”, in Parallel Problem Solving from Nature, 2008, pp. 358–367.
J. Clune, Ofria, C., and Pennock, R. T., “The sensitivity of HyperNEAT to different geometric representations of a problem”, in Proceedings of the Genetic and Evolutionary Computation Conference, 2009, pp. 675–682.
J. Clune, Goldsby, H. J., Ofria, C., and Pennock, R. T., “Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory”, Proceedings of the Royal Society B: Biological Sciences, vol. 278, pp. 666-674, 2011.
J. Clune, Misevic, D., Ofria, C., Lenski, R. E., Elena, S. F., and Sanjuán, R., “Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes”, PLoS Computational Biology, vol. 4, p. e1000187, 2008.
J. Clune, Beckmann, B. E., McKinley, P. K., and Ofria, C., “Investigating whether HyperNEAT produces modular neural networks”, in Proceedings of the Genetic and Evolutionary Computation Conference, 2010, pp. 635–642.
J. Clune, Beckmann, B. E., Pennock, R. T., and Ofria, C., “HybrID: A Hybridization of Indirect and Direct Encodings for Evolutionary Computation”, in Proceedings of the European Conference on Artificial Life, 2009.
A. Christlieb and Ong, B., “Implicit Parallel Time Integrators”, Journal of Scientific Computing, vol. 46, no. 1, 2010.
A. J. Christlieb, Haynes, R. D., and Ong, B. W., “A Parallel Space-Time Algorithm”, SIAM Journal on Scientific Computing, vol. 34, no. 5, pp. C233 - C248, 2012.
A. J. Christlieb, Macdonald, C. B., and Ong, B. W., “Parallel High-Order Integrators”, SIAM Journal on Scientific Computing, vol. 32, no. 2, pp. 818 - 835, 2010.
A. Christlieb and Ong, B., “Implicit Parallel Time Integrators”, Journal of Scientific Computing, vol. 49, no. 2, pp. 167 - 179, 2011.
J. Chocholouscaronová and Feig, M., “Balancing an accurate representation of the molecular surface in generalized born formalisms with integrator stability in molecular dynamics simulations”, Journal of Computational Chemistry, vol. 27, no. 6, pp. 719–729, 2006.

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