Publications

The following are publications made possible by iCER resources. MSU faculty that would like to highlight the output of their research that's benefited from iCER resources are invited to contact us.

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Author Title [ Type(Desc)] Year
Journal Article
S. M. Gopal, Mukherjee, S., Cheng, Y. - M., and Feig, M., “PRIMO/PRIMONA: A coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy”, Proteins: Structure, Function, and Bioinformatics, vol. 78, no. 5, pp. 1266-1281, 2010.
C. Shen and Phanikumar, M., “A Process-Based, Distributed Hydrologic Model Based on a Large-Scale Method for Surface - Subsurface Coupling, Advances in Water Resources”, Advances in Water Resources, vol. 33, 2010.
E. J. Hallman, Skillman, S. W., ,, Smith, B. D., O'Shea, B. W., Burns, J. O., and Norman, M. L., “The Properties of X-ray Cold Fronts in a Statistical Sample of Simulated Galaxy Clusters”, \apj, vol. 725, pp. 1053-1068, 2010.
R. Walker, Moore, N., Arima, E., Perz, S., Simmons, C., Caldas, M., Vergara, D., and Bohrer, C., “Protecting the Amazon with Protected Areas”, PNAS, vol. 106, 2009.
F. Delano IV, Castellanos, E., McCracken, J., and Demir, S., “A rare earth metallocene containing a 2{,}2′-azopyridyl radical anion”, Chem. Sci., p. -, 2021.
N. V. Priezjev, “Rate-dependent slip boundary conditions for simple fluids”, Physical Review E, vol. 75, no. 5, p. 51605, 2007.
N. V. Priezjev, “Relationship between induced fluid structure and boundary slip in nanoscale polymer films”, Physical Review E, vol. 82, 2010.
K. A., Chun, H. - C., Mazer, M., Wang, W., Rose, J. B., Smucker, A., and Rivers, M., “Relationships between intra-aggregate pore structures and distributions of Escherichia coli within soil macro-aggregates”, Applied Soil Ecology, vol. 63, pp. 134-142, 2013.
P. Piecuch and Wloch, M., “Renormalized coupled-cluster methods exploiting left eigenstates of the similarity-transformed Hamiltonian”, The Journal of Chemical Physics, vol. 123, no. 22, pp. 224105–10, 2005.
M. Kulke and Vermaas, J. V., “Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations”, Journal of Chemical Theory and Computation, vol. 18, no. 10, pp. 6161 - 6171, 2022.
A. Niavarani and Priezjev, N. V., “Rheological study of polymer flow past rough surfaces with slip boundary conditions”, Journal of Chemical Physics, vol. 129, no. 14, 2008.
E. J. Hallman, O'Shea, B. W., Smith, B. D., Burns, J. O., and Norman, M. L., “The Santa Fe Light Cone Simulation Project. II. The Prospects for Direct Detection of the Whim with SZE Surveys”, \apj, vol. 698, pp. 1795-1802, 2009.
A. Tomic, Rak, Z., Veazey, J., Malliakas, C., Mahanti, S. D., Kanatzidis, M., and Tessmer, S., “Scanning tunneling microscopy study of the CeTe3 charge density wave”, Physical Review B, vol. 79, no. 8, 2009.
I. Boustani, Zhu, Z., and Tománek, D., “Search for the largest two-dimensional aggregates of boron: An ab initio study”, Phys. Rev. B, vol. 83, p. 193405, 2011.
R. J. Woods, Barrick, E., Cooper, T. F., Shrestha, U., Kauth, M. R., and Lenski, R. E., “Second-order selection for evolvability in a large Escherichia coli population”, Science, vol. 331, 2011.
R. J. Woods, Barrick, J. E., Cooper, T. F., Shrestha, U., Kauth, M. R., and Lenski, R. E., “Second-order selection for evolvability in a large Escherichia coli population”, Science, vol. 331, pp. 1433-1436, 2011.
J. Clune, Goldsby, H. J., Ofria, C., and Pennock, R. T., “Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory”, Proceedings of the Royal Society B: Biological Sciences, vol. 278, pp. 666-674, 2011.
T. Fujimori, Urita, K., Tomanek, D., Ohba, T., Moriguchi, I., Endo, M., and Kaneko, K., “Selective probe of the morphology and local vibrations at carbon nanoasperities”, J. Chem. Phys., vol. 136, p. 064505, 2012.
K. Starosta, Dewald, A., Dunomes, A., Adrich, P., Amthor, A. M., Baumann, T., Bazin, D., Bowen, M., Brown, B. A., Chester, A., Gade, A., Galaviz, D., Glasmacher, T., Ginter, T., Hausmann, M., Horoi, M., Jolie, J., Melon, B., Miller, D., Moeller, V., Norris, R. P., Pissulla, T., Portillo, M., Rother, W., Shimbara, Y., Stolz, A., Vaman, C., Voss, P., Weisshaar, D., and Zelevinsky, V., “Shape and Structure of N = Z 64Ge: Electromagnetic Transition Rates from the Application of the Recoil Distance Method to a Knockout Reaction”, PHYSICAL REVIEW LETTERS, vol. 99, 2007.
N. V. Priezjev, “Shear rate threshold for the boundary slip in dense polymer films”, Phys. Rev. E, vol. 80, no. 3, p. 11 Pages, 2009.
H. L. Crawford, Fallon, P., Macchiavelli, A. O., Clark, R. M., Brown, B. A., Tostevin, J. A., Bazin, D., Aoi, N., Doornenbal, P., Matsushita, M., Scheit, H., Steppenbeck, D., Takeuchi, S., Baba, H., Campbell, C. M., Cromaz, M., Ideguchi, E., Kobayashi, N., Kondo, Y., Lee, G., Lee, I. Y., Lee, J., Li, K., Michimasa, S., Motobayashi, T., Nakamura, T., Ota, S., Paschalis, S., Petri, M., Sako, T., Sakurai, H., Shimoura, S., Takechi, M., Togano, Y., Wang, H., and Yoneda, K., “Shell and Shape Evolution at N=28: The 40Mg Ground State”, PHYSICAL REVIEW C, vol. 80, 2014.
M. Horoi, Brown, B. A., Otsuka, T., Honma, M., and Mizusaki, T., “Shell model analysis of the 56Ni spectrum in the full pf model space”, PHYSICAL REVIEW C, vol. 73, no. 6, 2006.
B. A. Brown and Rae, W. D. M., “The Shell-Model Code NuShellX@MSU”, Nuclear Data Sheets, vol. 120, 2014.
F. A. Gómez, Minchev, I., Villalobos, Á., O'Shea, B. W., and Williams, M. E. K., “Signatures of minor mergers in Milky Way-like disc kinematics: Ringing revisited”, ArXiv e-prints, 2011.
P. Piecuch, Wloch, M., Gour, J. R., and Kinal, A., “Single-reference, size-extensive, non-iterative coupled-cluster approaches to bond breaking and biradicals”, Chemical Physics Letters, vol. 418, pp. 467–474, 2006.

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