Publications

The following are publications made possible by iCER resources. MSU faculty that would like to highlight the output of their research that's benefited from iCER resources are invited to contact us.

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K
M. Kulke and Vermaas, J. V., Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations, Journal of Chemical Theory and Computation, vol. 18, no. 10, pp. 6161 - 6171, 2022.
M. Kulke, Kurtz, E., Boren, D. M., Olson, D. M., Koenig, A. M., Hoffmann-Benning, S., and Vermaas, J. V., PLAT domain protein 1 (PLAT1/PLAFP) binds to the Arabidopsis thaliana plasma membrane and inserts a lipid, vol. 338, p. 111900, 2023.
M. Kulke, Olson, D. M., Huang, J., Kramer, D. M., and Vermaas, J. V., Long-Range Electron Transport Rates Depend on Wire Dimensions in Cytochrome Nanowires, Small, vol. 19, no. 52, p. 2304013, 2023.
M. Kulke, Weraduwage, S. M., Sharkey, T. D., and Vermaas, J. V., Nanoscale simulation of the thylakoid membrane response to extreme temperatures, Plant, Cell & Environment, vol. 46, no. 8, pp. 2419 - 2431, 2023.
A. N. Kravchenko, Wang, W., Smucker, A. J. M., and Rivers, M. L., Long-term differences in tillage and land use affect intra-aggregate pore heterogeneity, Soil Sci. Soc Am J, vol. 75, pp. 1658-1666, 2011.
A. Kinal and Piecuch, P., Computational Investigation of the Conrotatory and Disrotatory Isomerization Channels of Bicyclo[1.1.0]butane to Buta-1,3-diene: A Completely Renormalized Coupled-Cluster Study, Journal of Physical Chemistry A, vol. 111, no. 4, pp. 734-742, 2007.
A. Keen, Lessons Learned When Building a Greenfield High Performance Computing Ecosystem, in 26th Large Installation System Administration conference {LISA), San Diego, California, USA, 2012.
J
P. Juhás, Cherba, D. M., Duxbury, P. M., Punch, W. F., and Billinge, S. J. L., Ab initio determination of solid-state nanostructure, Nature, vol. 440, pp. 655–658, 2006.
Z. Johnston, Wasik, S., Titus, R., Warren, M. K. L., O’Connor, E. P., Zegers, R., and Couch, S. M., Comparison of Electron Capture Rates in the N = 50 Region using 1D Simulations of Core-collapse Supernovae, The Astrophysical Journal, vol. 939, p. 15, 2022.
L. Y. Jia, Accuracy of the new pairing theory and its improvement, PHYSICAL REVIEW C, vol. 88, 2013.
A. C. Jensen and Cheng, B. H. C., On the Use of Genetic Programming for Automated Refactoring and the Introduction of Design Patterns, in Proceedings of the 12th annual conference on Genetic and Evolutionary Computation, 2010, pp. 1341–1348.
G. Janson, Valdes-Garcia, G., Heo, L., and Feig, M., Direct generation of protein conformational ensembles via machine learning, vol. 14, no. 1, p. 774, 2023.
A. Jammalamadaka, Li, Z., and Jaberi, F. A., Subgrid-Scale Models for Large-Eddy Simulations of Shock-Boundary Layer Interactions,, AIAA Journal, vol. Vol. 5, no. No. 5 , 2013.
A. Jammalamadaka, Li, Z., and Jaberi, F. A., Numerical Investigations of Shock Wave Interactions with a Supersonic Turbulent Boundary Layer, Physics of Fluids, vol. 26, no. 5, 2014.
A. Jammalamadaka and Jaberi, F. A., Large -Scale Simulations of Incident Shock-Turbulent Boundary Layer Interactions, in 48th AIAA Aerospace Sciences Meeting, Orlando, FL, 2010.
F. A. Jaberi and Irannejad, A., Numerical Study of High Speed Evaporating Sprays, International Journal of Multiphase Flow, vol. 70, 2015.
F. A. Jaberi and Li, Z., Large Eddy Simulations of Two-Phase Turbulent Reacting Flows, in 46TH AIAA Aerospace Sciences Meeting and Exhibit, Reno, Nevada, 2008.

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