Publications
The following are publications made possible by iCER resources. MSU faculty that would like to highlight the output of their research that's benefited from iCER resources are invited to contact us.
] , “PRIMO/PRIMONA: A coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy”, Proteins: Structure, Function, and Bioinformatics, vol. 78, no. 5, pp. 1266-1281, 2010.
, “A Process-Based, Distributed Hydrologic Model Based on a Large-Scale Method for Surface - Subsurface Coupling, Advances in Water Resources”, Advances in Water Resources, vol. 33, 2010.
, “The Properties of X-ray Cold Fronts in a Statistical Sample of Simulated Galaxy Clusters”, \apj, vol. 725, pp. 1053-1068, 2010.
, “Relationship between induced fluid structure and boundary slip in nanoscale polymer films”, Physical Review E, vol. 82, 2010.
, “Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects”, BMC Systems Biology, vol. 4, p. 142, 2010.
, “On the Use of Genetic Programming for Automated Refactoring and the Introduction of Design Patterns”, in Proceedings of the 12th annual conference on Genetic and Evolutionary Computation, 2010, pp. 1341–1348.
, “Approximate kernel k-means: solution to large scale kernel clustering”, in Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining, San Diego, CA, USA, 2011, pp. 895–903.
, “Calling to Be Your Best: Your Calling to Science”, Mater. Express, vol. 1, pp. 86–87, 2011.
, “Comparison of image segmentation methods in simulated 2D and 3D microtomographic images of soil aggregates”, Geoderma, vol. 162, pp. 231-241, 2011.
, “The Comprehensive Phytopathogen Genomics Resource: An electronic resource for data-mining plant pathogen genomes”, Database, doi: 10.1093/database/bar053., 2011.
, “East African Food Security as Influenced by Future Climate Change and Land Use Change at Local to Regional Scales”, Climatic Change, vol. 107, 2011.
, “Evaluating error propagation in coupled land-atmosphere models”, Earth Interactions, vol. 15, 2011.
, “Fame on Sale: Pitfalls of the Ranking Game”, Mater. Express, vol. 1, pp. 355–356, 2011.
, “Implicit Parallel Time Integrators”, Journal of Scientific Computing, vol. 49, no. 2, pp. 167 - 179, 2011.
, “Information Content of Colored Motifs in Complex Networks”, Artificial Life, vol. 17, pp. 375–390, 2011.
, “Long-term differences in tillage and land use affect intra-aggregate pore heterogeneity”, Soil Sci. Soc Am J, vol. 75, pp. 1658-1666, 2011.
, “MODELS TO AID IN THE SELECTION OF PROCEDURES USED TO MANAGE LAKE ERIE WALLEYE (SANDER VITREUS)”, Michigan State University, 2011.
, “Molecular diffusion and slip boundary conditions at smooth surfaces with periodic and random nanoscale textures”, J. Chem. Phys., vol. 135, 2011.
, “Molecular Dynamics Study of Thermal Transport in GaAs-SAM-GaAs Junctions with Ab-initio Characterization of Thiol-GaAs Bonds”, J. of App. Phys., vol. 109, 2011.
, “Molecular dynamics study of thermal transport in GaAs-self-assembly monolayer-GaAs junctions with ab initio characterization of thiol-GaAs bonds”, J. of App. Phys., vol. 109, 2011.
, “Multi-label Learning with Incomplete Class Assignments”, in Proceedings of IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2011), 2011.
, “Nanoconfinement effects on the reversibility of hydrogen storage in ammonia borane: A first-principles study”, J. Chem. Phys., vol. 134, p. 214501, 2011.
, “The Nature of the Warm/Hot Intergalactic Medium. I. Numerical Methods, Convergence, and O VI Absorption”, \apj, vol. 731, p. 6-+, 2011.
, “On the Performance of Indirect Encoding Across the Continuum of Regularity”, IEEE Transactions on Evolutionary Computation, 2011.
, “Reducing the barrier to entry using portable apps”, in Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, New York, NY, USA, 2011, p. 47.