Publications

The following are publications made possible by iCER resources. MSU faculty that would like to highlight the output of their research that's benefited from iCER resources are invited to contact us.

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F. A. Jaberi and Li, Z., Large Eddy Simulations of Two-Phase Turbulent Reacting Flows, in 46TH AIAA Aerospace Sciences Meeting and Exhibit, Reno, Nevada, 2008.
F. A. Jaberi and Irannejad, A., Numerical Study of High Speed Evaporating Sprays, International Journal of Multiphase Flow, vol. 70, 2015.
A. Jammalamadaka, Li, Z., and Jaberi, F. A., Numerical Investigations of Shock Wave Interactions with a Supersonic Turbulent Boundary Layer, Physics of Fluids, vol. 26, no. 5, 2014.
A. Jammalamadaka and Jaberi, F. A., Large -Scale Simulations of Incident Shock-Turbulent Boundary Layer Interactions, in 48th AIAA Aerospace Sciences Meeting, Orlando, FL, 2010.
A. Jammalamadaka, Li, Z., and Jaberi, F. A., Subgrid-Scale Models for Large-Eddy Simulations of Shock-Boundary Layer Interactions,, AIAA Journal, vol. Vol. 5, no. No. 5 , 2013.
G. Janson, Valdes-Garcia, G., Heo, L., and Feig, M., Direct generation of protein conformational ensembles via machine learning, vol. 14, no. 1, p. 774, 2023.
A. C. Jensen and Cheng, B. H. C., On the Use of Genetic Programming for Automated Refactoring and the Introduction of Design Patterns, in Proceedings of the 12th annual conference on Genetic and Evolutionary Computation, 2010, pp. 1341–1348.
L. Y. Jia, Accuracy of the new pairing theory and its improvement, PHYSICAL REVIEW C, vol. 88, 2013.
Z. Johnston, Wasik, S., Titus, R., Warren, M. K. L., O’Connor, E. P., Zegers, R., and Couch, S. M., Comparison of Electron Capture Rates in the N = 50 Region using 1D Simulations of Core-collapse Supernovae, The Astrophysical Journal, vol. 939, p. 15, 2022.
P. Juhás, Cherba, D. M., Duxbury, P. M., Punch, W. F., and Billinge, S. J. L., Ab initio determination of solid-state nanostructure, Nature, vol. 440, pp. 655–658, 2006.
K
A. Keen, Lessons Learned When Building a Greenfield High Performance Computing Ecosystem, in 26th Large Installation System Administration conference {LISA), San Diego, California, USA, 2012.
A. Kinal and Piecuch, P., Computational Investigation of the Conrotatory and Disrotatory Isomerization Channels of Bicyclo[1.1.0]butane to Buta-1,3-diene: A Completely Renormalized Coupled-Cluster Study, Journal of Physical Chemistry A, vol. 111, no. 4, pp. 734-742, 2007.
A. N. Kravchenko, Wang, W., Smucker, A. J. M., and Rivers, M. L., Long-term differences in tillage and land use affect intra-aggregate pore heterogeneity, Soil Sci. Soc Am J, vol. 75, pp. 1658-1666, 2011.
M. Kulke, Weraduwage, S. M., Sharkey, T. D., and Vermaas, J. V., Nanoscale simulation of the thylakoid membrane response to extreme temperatures, Plant, Cell & Environment, vol. 46, no. 8, pp. 2419 - 2431, 2023.
M. Kulke and Vermaas, J. V., Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations, Journal of Chemical Theory and Computation, vol. 18, no. 10, pp. 6161 - 6171, 2022.
M. Kulke, Kurtz, E., Boren, D. M., Olson, D. M., Koenig, A. M., Hoffmann-Benning, S., and Vermaas, J. V., PLAT domain protein 1 (PLAT1/PLAFP) binds to the Arabidopsis thaliana plasma membrane and inserts a lipid, vol. 338, p. 111900, 2023.
M. Kulke, Olson, D. M., Huang, J., Kramer, D. M., and Vermaas, J. V., Long-Range Electron Transport Rates Depend on Wire Dimensions in Cytochrome Nanowires, Small, vol. 19, no. 52, p. 2304013, 2023.
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C. Langer, Montes, F., Aprahamian, A., Bardayan, D. W., Bazin, D., Brown, B. A., Browne, J., Crawford, H., Cyburt, R., Domingo-Pardo, C., Gade, A., George, S., Hosmer, P., Keek, L., Kontos, A., Lee, I. Y., Lemasson, A., Lunderberg, E., Maeda, Y., Matos, M., Meisel, Z., Noji, S., Nunes, F. M., Nystrom, A., Perdikakis, G., Pereira, J., Quinn, S. J., Recchia, F., Schatz, H., Scott, M., Siegl, K., Simon, A., Smith, M., Spyrou, A., Stevens, J., Stroberg, S. R., Weisshaar, D., Wheeler, J., Wimmer, K., and Zegers, R. G. T., Determining the rp-Process Flow through 56Ni: Resonances in 57Cu(p,g)58Zn Indentified with GRETINA, PHYSICAL REVIEW LETTERS, vol. 113, 2014.
Z. Li and Jaberi, F. A., A New Model for Numerical Simulations of Two-Phase Turbulent Combustion, in National Combustion Meeting, Ann Arbor, MI, 2009.
Z. Li, Jaberi, F. A., and Yaldizli, M., Filtered Mass Density Function for Numerical Simulations of Spray Combustion, in 46th AIAA Aerospace Sciences Meeting and Exhibit, Reno, Nevada, 2008.
Z. Li, Jaberi, F. A., and Banaeizadeh, A., Large-Scale Simulations of Supersonic Turbulent Reacting Flows, in 48th AIAA Aerospace Sciences Meeting, Orlando, FL, 2010.
Z. Li and Jaberi, F. A., Large-Scale Simulations of High Speed Turbulent Flows, in 47th AIAA Aerospace Sciences Meeting, Orlando, FL, 2009.
Z. Li and Jaberi, F. A., Numerical Investigations of Shock-Turbulence Interactions in a Planar Mixing Layer, in 48th AIAA Aerospace Sciences Meeting, Orlando, FL, 2010.

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